Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite
Identifieur interne : 001276 ( Main/Exploration ); précédent : 001275; suivant : 001277Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite
Auteurs : Ram N Díaz-Uriarte ; Andreu Alibés ; Edward R. Morrissey ; Andrés Ca Ada ; Oscar M. Rueda ; Mariana L. NevesSource :
- Nucleic Acids Research [ 0305-1048 ] ; 2007.
Abstract
Asterias (
Url:
DOI: 10.1093/nar/gkm229
PubMed: 17488846
PubMed Central: 1933128
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite</title><author><name sortKey="Diaz Uriarte, Ram N" sort="Diaz Uriarte, Ram N" uniqKey="Diaz Uriarte R" first="Ram N" last="Díaz-Uriarte">Ram N Díaz-Uriarte</name></author><author><name sortKey="Alibes, Andreu" sort="Alibes, Andreu" uniqKey="Alibes A" first="Andreu" last="Alibés">Andreu Alibés</name></author><author><name sortKey="Morrissey, Edward R" sort="Morrissey, Edward R" uniqKey="Morrissey E" first="Edward R." last="Morrissey">Edward R. Morrissey</name></author><author><name sortKey="Ca Ada, Andres" sort="Ca Ada, Andres" uniqKey="Ca Ada A" first="Andrés" last="Ca Ada">Andrés Ca Ada</name></author><author><name sortKey="Rueda, Oscar M" sort="Rueda, Oscar M" uniqKey="Rueda O" first="Oscar M." last="Rueda">Oscar M. Rueda</name></author><author><name sortKey="Neves, Mariana L" sort="Neves, Mariana L" uniqKey="Neves M" first="Mariana L." last="Neves">Mariana L. Neves</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">17488846</idno><idno type="pmc">1933128</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933128</idno><idno type="RBID">PMC:1933128</idno><idno type="doi">10.1093/nar/gkm229</idno><date when="2007">2007</date><idno type="wicri:Area/Pmc/Corpus">000764</idno><idno type="wicri:Area/Pmc/Curation">000764</idno><idno type="wicri:Area/Pmc/Checkpoint">000449</idno><idno type="wicri:Area/Ncbi/Merge">000240</idno><idno type="wicri:Area/Ncbi/Curation">000240</idno><idno type="wicri:Area/Ncbi/Checkpoint">000240</idno><idno type="wicri:doubleKey">0305-1048:2007:Diaz Uriarte R:asterias:integrated:analysis</idno><idno type="wicri:Area/Main/Merge">001292</idno><idno type="wicri:Area/Main/Curation">001276</idno><idno type="wicri:Area/Main/Exploration">001276</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite</title><author><name sortKey="Diaz Uriarte, Ram N" sort="Diaz Uriarte, Ram N" uniqKey="Diaz Uriarte R" first="Ram N" last="Díaz-Uriarte">Ram N Díaz-Uriarte</name></author><author><name sortKey="Alibes, Andreu" sort="Alibes, Andreu" uniqKey="Alibes A" first="Andreu" last="Alibés">Andreu Alibés</name></author><author><name sortKey="Morrissey, Edward R" sort="Morrissey, Edward R" uniqKey="Morrissey E" first="Edward R." last="Morrissey">Edward R. Morrissey</name></author><author><name sortKey="Ca Ada, Andres" sort="Ca Ada, Andres" uniqKey="Ca Ada A" first="Andrés" last="Ca Ada">Andrés Ca Ada</name></author><author><name sortKey="Rueda, Oscar M" sort="Rueda, Oscar M" uniqKey="Rueda O" first="Oscar M." last="Rueda">Oscar M. Rueda</name></author><author><name sortKey="Neves, Mariana L" sort="Neves, Mariana L" uniqKey="Neves M" first="Mariana L." last="Neves">Mariana L. Neves</name></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="e-ISSN">1362-4962</idno><imprint><date when="2007">2007</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Asterias (<ext-link ext-link-type="uri" xlink:href="http://www.asterias.info">http://www.asterias.info</ext-link>) is an open-source, web-based, suite for the analysis of gene expression and aCGH data. Asterias implements validated statistical methods, and most of the applications use parallel computing, which permits taking advantage of multicore CPUs and computing clusters. Access to, and further analysis of, additional biological information and annotations (PubMed references, Gene Ontology terms, KEGG and Reactome pathways) are available either for individual genes (from clickable links in tables and figures) or sets of genes. These applications cover from array normalization to imputation and preprocessing, differential gene expression analysis, class and survival prediction and aCGH analysis. The source code is available, allowing for extention and reuse of the software. The links and analysis of additional functional information, parallelization of computation and open-source availability of the code make Asterias a unique suite that can exploit features specific to web-based environments.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Ge, Y" uniqKey="Ge Y">Y Ge</name></author><author><name sortKey="Dudoit, S" uniqKey="Dudoit S">S Dudoit</name></author><author><name sortKey="Speed, T" uniqKey="Speed T">T Speed</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Reiner, A" uniqKey="Reiner A">A Reiner</name></author><author><name sortKey="Yekutieli, D" uniqKey="Yekutieli D">D Yekutieli</name></author><author><name sortKey="Benjamini, Y" uniqKey="Benjamini Y">Y Benjamini</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Potter, Jd" uniqKey="Potter J">JD Potter</name></author></analytic></biblStruct><biblStruct><analytic><author><name 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Al-Shahrour</name></author><author><name sortKey="Diaz Uriarte, R" uniqKey="Diaz Uriarte R">R Díaz-Uriarte</name></author><author><name sortKey="Dopazo, J" uniqKey="Dopazo J">J Dopazo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Al Shahrour, F" uniqKey="Al Shahrour F">F Al-Shahrour</name></author><author><name sortKey="Diaz Uriarte, R" uniqKey="Diaz Uriarte R">R Díaz-Uriarte</name></author><author><name sortKey="Dopazo, J" uniqKey="Dopazo J">J Dopazo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Alibes, A" uniqKey="Alibes A">A Alibés</name></author><author><name sortKey="Yankilevich, P" uniqKey="Yankilevich P">P Yankilevich</name></author><author><name sortKey="Ca Ada, A" uniqKey="Ca Ada A">A Cañada</name></author><author><name sortKey="Diaz Uriarte, R" uniqKey="Diaz Uriarte R">R Diaz-Uriarte</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Vaquerizas, Jm" uniqKey="Vaquerizas J">JM Vaquerizas</name></author><author><name sortKey="Dopazo, J" uniqKey="Dopazo J">J Dopazo</name></author><author><name sortKey="Diaz Uriarte, R" uniqKey="Diaz Uriarte R">R Díaz-Uriarte</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="El Ansary, S" uniqKey="El Ansary S">S El-Ansary</name></author><author><name sortKey="Grolaux, D" uniqKey="Grolaux D">D Grolaux</name></author><author><name sortKey="Van Roy, P" uniqKey="Van Roy P">P Van Roy</name></author><author><name sortKey="Rafea, M" uniqKey="Rafea M">M Rafea</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="Alibes, Andreu" sort="Alibes, Andreu" uniqKey="Alibes A" first="Andreu" last="Alibés">Andreu Alibés</name><name sortKey="Ca Ada, Andres" sort="Ca Ada, Andres" uniqKey="Ca Ada A" first="Andrés" last="Ca Ada">Andrés Ca Ada</name><name sortKey="Diaz Uriarte, Ram N" sort="Diaz Uriarte, Ram N" uniqKey="Diaz Uriarte R" first="Ram N" last="Díaz-Uriarte">Ram N Díaz-Uriarte</name><name sortKey="Morrissey, Edward R" sort="Morrissey, Edward R" uniqKey="Morrissey E" first="Edward R." last="Morrissey">Edward R. Morrissey</name><name sortKey="Neves, Mariana L" sort="Neves, Mariana L" uniqKey="Neves M" first="Mariana L." last="Neves">Mariana L. Neves</name><name sortKey="Rueda, Oscar M" sort="Rueda, Oscar M" uniqKey="Rueda O" first="Oscar M." last="Rueda">Oscar M. Rueda</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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